- Category : Histamine Intolerance / MCAS
Are oxalates and histamine intolerance causing your health issues? Oxalates are compounds found in many foods that can interfere with mineral absorption. Histamine intolerance occurs when your body can’t break down histamine properly, leading to symptoms like headaches and digestive issues.
In today’s article, I explain the link between oxalates and histamine, the role of the gut microbiome and oxalate-degrading bacteria, foods that contain high levels of oxalates, supplements that help bind up oxalates, Oxalate dumping, and finally some tips and natural solutions for reducing oxalates and histamines. We have a lot to unpack!

Key Takeaways
- Oxalates can cause a Histamine release (*)
- Oxalates and histamine intolerance can intertwine, leading to increased inflammation and worsened health symptoms for affected individuals.
- Managing oxalate intake by avoiding high-oxalate foods and gradually transitioning to a low-oxalate diet is essential for alleviating symptoms.
- Gut health plays a critical role in processing both oxalates and histamines, with a balanced microbiome necessary for minimizing symptoms and improving overall health (*).
- Taking Calcium supplementation with meals reduces urinary oxalate excretion, thus reducing calcium oxalate supersaturation
- Excessive vitamin D supplementation might increase urinary calcium excretion, increasing the risk for stone formation. Maintain optimal levels of vitamin D with regular monitoring.
- A robust gut microbiome containing adequate oxalate-degrading bacteria can aid in minimizing oxalate absorption
- Restoring gut health through dietary changes and supplementation can positively influence oxalate and histamine processing.
What Are Oxalates and What Role Do They Play In Histamine Intolerance?
Oxalates are naturally occurring substances found in many plants, playing a crucial role in calcium disposal. They are formed when oxalic acid binds to minerals, and they can be present in numerous foods, including healthy options like spinach and rhubarb. While oxalates serve a purpose in plants, excessive consumption can lead to significant health issues in humans.
When oxalates accumulate in the body, they can interfere with mineral absorption by binding to calcium, magnesium, and iron. This can result in deficiencies and contribute to chronic conditions such as calcium oxalate kidney stones, digestive issues, autoimmune disorders, and neurological conditions, including oxalate absorption and oxalate crystals and calcium oxalate crystals.
Histamine intolerance, on the other hand, occurs when there is an excess of histamine in the body. Histamine is a vital compound involved in immune response, brain communication, and digestion. However, when histamine levels become too high, it can lead to various health problems, including headaches, hives, digestive issues, and more.
The inability to process oxalates can turn them into toxins, potentially leading to what is known as oxalate intolerance. This condition can exacerbate existing health issues and create new ones, making it essential to understand and manage oxalate intake effectively.
How Oxalates Affect Histamine Levels
High levels of oxalates can trigger mast cell activation syndrome (*), leading to increased inflammation and higher histamine levels(*). Mast cells play a crucial role in the immune system, releasing histamine during allergic reactions. When high-oxalate foods are consumed, they can provoke mast cells, resulting in symptoms similar to those of histamine intolerance.
Oxalates can also provoke the immune system, leading to inflammatory responses and elevated histamine production. This can be particularly problematic for individuals with histamine intolerance, as their symptoms may worsen due to the added stress on the body’s detoxification systems.
Factors such as gut health, leaky gut syndrome, mineral deficiencies, antibiotic use, and dysbiosis can influence endogenous oxalate production. These factors can further complicate the management of oxalate and histamine intolerance, making it essential to address underlying issues.
Gut health is particularly crucial, as a balanced gut microbiome aids in the breakdown of oxalates(*), reducing their absorption and potential buildup in the body. Dysbiosis, or an imbalance in gut bacteria, can hinder this process, leading to increased oxalate levels and exacerbating symptoms of histamine intolerance. Antibiotic use can disrupt the gut microbiome, diminishing the population of beneficial bacteria like Oxalobacter formigenes, which play a key role in degrading oxalates.
Oxalobacter formigenes: An Important Gut Bacteria When It Comes To Oxalates
Oxalobacter formigenes and oxalates play a significant role in the body’s ability to manage oxalate levels (*). Oxalobacter formigenes is a type of bacteria found in the gut that specifically degrades oxalates, reducing their absorption and aiding in their elimination from the body. This bacterium is crucial for maintaining a balanced oxalate level, as it helps prevent the accumulation of oxalates, which can lead to kidney stones and other health issues.

A healthy population of Oxalobacter formigenes can decrease the risk of calcium oxalate kidney stones by efficiently breaking down oxalates before they are absorbed into the bloodstream(*). However, factors such as antibiotic use, poor gut health, and dietary choices can diminish the presence of this beneficial bacteria, leading to increased oxalate levels and associated complications.
Promoting the growth of Oxalobacter formigenes can be achieved through dietary and lifestyle changes (*). Consuming a diet rich in prebiotics and probiotics supports a healthy gut microbiome, creating an environment conducive to the growth of oxalate-degrading bacteria. Ironically, the same type of foods that are needed to encourage the growth of oxalate-degrading bacteria are the ones that patients need to avoid at times.

Understanding the role of Oxalobacter formigenes in oxalate metabolism highlights the importance of maintaining a healthy gut environment. By supporting the growth of this bacteria, individuals can better manage their oxalate levels, reduce the risk of kidney stones, and alleviate symptoms associated with oxalate and histamine intolerance.
Leaky gut syndrome, characterized by increased intestinal permeability, can allow more oxalates and histamines to enter the bloodstream, intensifying symptoms (*). Addressing mineral deficiencies is also vital, as adequate levels of calcium and magnesium can bind to oxalates in the digestive tract, preventing their absorption(*).
Incorporating low-histamine probiotics and prebiotics into the diet can support a healthy gut microbiome, promoting the breakdown of dietary oxalates and improving tolerance to histamines. Additionally, focusing on a nutrient-rich low-histamine diet can help replenish essential minerals, supporting the body’s natural detoxification processes. By tackling these underlying issues, individuals can better manage oxalate and histamine intolerance, reducing symptoms and enhancing overall health.
In summary, the interaction between oxalates and histamine highlights the importance of managing both to reduce symptoms and improve overall health. Understanding this relationship can help individuals take proactive steps in their dietary choices and lifestyle modifications.

Symptoms of Excess Oxalates and Histamine Intolerance
High levels of oxalates can manifest in various symptoms, including joint pain, fatigue, and digestive issues. These symptoms can be particularly pronounced in previously injured areas, causing significant discomfort. Fatigue and muscle issues are also common, as oxalates can affect mitochondrial function, leading to chronic fatigue syndrome-like symptoms.
In addition to these symptoms, individuals may experience issues like brain fog, which can impair cognitive function and concentration. This mental cloudiness often accompanies physical symptoms, making it challenging to perform daily tasks efficiently. Furthermore, excess oxalates can contribute to the formation of calcium oxalate crystals, which may lead to kidney stones and related urinary tract discomfort.
Digestive disturbances, such as bloating, nausea, and irregular bowel movements, are also prevalent among those with high oxalate levels. These issues arise because oxalates can irritate the digestive tract, leading to inflammation and discomfort. Skin problems, including rashes and hives, may occur as a result of the body’s attempt to eliminate excess oxalates, which can overlap with histamine-related skin reactions.
For individuals with a predisposition to kidney diseases, the accumulation of oxalates poses a significant risk. The formation of calcium oxalate kidney stones can lead to severe pain and potential kidney damage if not addressed promptly. Therefore, monitoring oxalate intake and managing symptoms is crucial for preventing these complications and maintaining overall health.
Inflammation and chronic pain are hallmark symptoms of both excess oxalates and histamine intolerance. The inflammatory response triggered by oxalates can exacerbate pain and discomfort throughout the body, making it difficult to manage daily activities. Histamine intolerance can also contribute to these symptoms, adding another layer of complexity to diagnosis and treatment.
Additional symptoms of histamine intolerance include emotional disturbances such as irritability and brain fog. These symptoms can significantly impact an individual’s quality of life, making it essential to identify and manage the underlying causes. Frequent headaches are another common complaint among individuals with oxalate sensitivity.
Oxalate dumping, a process where the body releases stored oxalates, can cause heightened skin reactions such as rashes or hives, painful bowel movements, Brain fog, painful urination, joint and muscle pain. This can overlap with a histamine dump, making it challenging to pinpoint the exact cause of discomfort.
High Oxalate Foods to Avoid
Certain foods are notorious for their high oxalate content and should be avoided by those managing oxalate and histamine intolerance.
Vegetables that are particularly high in dietary oxalates include oxalate-rich foods:
- Spinach
- Kale
- Beets
- Swiss Chard
- Rhubarb
- Cassava Root (1260mg per 1oomg/3.5oz)
- Soy, Tofu
- Sweet potatoes
- Chocolate and Cocoa (623g per 100g/3.5 oz)
- Wheat
- Buckwheat flour (269 g per 100g/3.5oz)
- Almonds
Fruits such as dates and raspberries also have high oxalate levels, with dates containing about 24 mg each and raspberries around 48 mg per cup. These fruits, while nutritious, can exacerbate symptoms in individuals sensitive to oxalates. Legumes like navy beans, which contain roughly 57 mg of oxalates per 3.5 oz serving, and nuts such as almonds are other high-oxalate foods that should be limited.
Certain vegetables, like firm tofu, which has 275 mg of dietary oxalate per 3-ounce serving, and berries like blackberries, should also be avoided. These foods can contribute to oxalate buildup and worsen symptoms related to excess oxalate. Additionally, wheat and other grains are known to have significant oxalate levels, potentially leading to issues in intolerant individuals.
Avoiding high-oxalate foods is crucial for managing symptoms effectively. Identifying and adjusting your diet to limit these foods can significantly reduce oxalate load and enhance overall health.
Managing Oxalate Intake for Histamine Intolerance
Transitioning to a low-oxalate diet should be done gradually to prevent oxalate dumping. This gradual approach allows the body to adjust and helps avoid the sudden release of stored oxalates, which can lead to uncomfortable symptoms. Oxalate dumping occurs when there is a rapid decrease in oxalate intake, prompting the body to release accumulated oxalates into the bloodstream. This can result in symptoms such as joint pain, fatigue, skin rashes, and digestive disturbances, making the transition challenging for those with sensitivities.
To effectively manage this process, it is recommended to reduce oxalate-rich foods slowly over at least two weeks. This gradual reduction can help the body adapt to the lower oxalate levels, minimizing the risk of oxalate dumping symptoms. Additionally, it’s important to monitor your body’s response during this transition. Keeping a food diary can be beneficial in tracking which foods you consume and any symptoms that arise. This can help identify specific triggers and adjust your diet accordingly.
Moreover, integrating foods that are naturally low in oxalates and histamines can ease the transition and support the body’s adaptation. Foods such as bananas, cucumbers, and cauliflower are excellent options that provide essential nutrients without contributing to oxalate buildup.
It’s also crucial to focus on gut health during this period. Incorporating probiotics and prebiotics into your diet can help maintain a healthy gut microbiome, aiding in the breakdown and elimination of oxalates. Probiotic-rich foods like yogurt and kefir, along with prebiotic foods such as garlic and onions, can support beneficial gut bacteria, enhancing your body’s ability to manage oxalate and histamine levels effectively.
Additionally, incorporating foods that support detoxification, such as those rich in antioxidants and anti-inflammatory properties, can aid in the body’s natural elimination processes.
Hydration plays a crucial role in this transition, as drinking plenty of water helps to flush out oxalates through urine, reducing the risk of kidney stones and other complications. Ensuring adequate calcium intake is also important, as calcium binds to oxalates in the digestive tract, preventing their absorption and facilitating their excretion.
Cooking high-oxalate vegetables can reduce their oxalate content, making them safer to consume(*). For example, boiling or steaming vegetables like spinach and kale can significantly lower their oxalate levels.
One way to help manage your oxalate levels is to increase your calcium levels. Calcium helps bind up oxalates in the gut and prevents their absorption. By binding up these oxalates, calcium supplementation can help reduce the risk of kidney stones. In addition to taking calcium supplementation, I recommend increasing calcium-rich foods in your diet. Both of these strategies can be beneficial for calcium oxalate stone formers with oxalate sensitivity.
Remember: Keeping a food journal is another practical strategy. Tracking high-oxalate foods and monitoring symptoms allows for informed dietary adjustments.
The Role of Gut Health in Oxalate and Histamine Intolerance
Gut health plays a pivotal role in managing oxalate and histamine intolerance. A balanced gut microbiome contains beneficial bacteria that can break down oxalates, reducing their absorption into the bloodstream. People who struggle with oxalates and salicylates often have Gut dysbiosis. This imbalance in gut bacteria impairs the body’s ability to break down histamine, salicylates, and oxalates. This can lead to both oxalate dumping and a histamine dump. Addressing gut dysbiosis through dietary changes and probiotics can help restore balance and improve tolerance.
Fat malabsorption also needs to be considered in people struggling with oxalate sensitivity. When the body is unable to properly absorb fats, it can lead to an increase in free fatty acids in the digestive tract. These fatty acids can bind to calcium, forming soaps that prevent calcium from binding to oxalates. As a result, more oxalates remain unbound and are absorbed into the bloodstream, increasing the risk of oxalate-related issues such as kidney stones and inflammation.
This can exacerbate symptoms for individuals with oxalate sensitivity, making it crucial to address fat malabsorption through dietary adjustments and supplements. Consuming medium-chain triglycerides (MCTs) instead of long-chain fats and ensuring adequate bile production can support better fat digestion and reduce the impact on oxalate absorption.
Additionally, incorporating digestive enzymes that aid in fat breakdown can further alleviate malabsorption issues. Addressing fat malabsorption not only helps in managing oxalate sensitivity and oxalate dumping but also supports overall digestive health, ensuring that nutrients are effectively absorbed and utilized by the body.
Leaky gut syndrome, a condition where the gut lining becomes permeable, can heighten sensitivity to histamines and oxalates. This makes managing intolerances more challenging, as increased absorption of these compounds can lead to significant health issues. Focusing on gut health can help mitigate these effects.
Certain gut bacteria, such as Oxalobacter formigenes, play a critical role in breaking down oxalates (*). Their absence can lead to oxalate accumulation and increased histamine-related reactions. Restoring gut health through dietary changes and supplementation can positively influence oxalate and histamine processing.
Oxalobacter formigenes is a unique bacterium that specifically targets oxalates, converting them into harmless compounds that can be easily excreted. This process is vital for preventing the buildup of oxalates in the body, which can otherwise lead to kidney stones and other health complications.
When the population of Oxalobacter formigenes is diminished, whether due to antibiotics, poor dietary habits, or not eating foods that contain oxalates, the body’s ability to manage oxalate levels is compromised, resulting in potential health issues.
To promote the growth of Oxalobacter formigenes and other beneficial bacteria, it is essential to initially focus on gut health. Incorporating prebiotics and low-histamine probiotics into the diet can foster a healthy gut environment conducive to the proliferation of oxalate-degrading bacteria. I typically recommend a hybridized diet that is not only low in histamines but also low in oxalate. I have found that this, in turn, reduces the risk of oxalate dumping.
A healthy gut microbiome with sufficient oxalate-degrading bacteria can help reduce oxalate absorption and oxalate dumping.
What is Oxalate Dumping
Oxalate dumping happens when your body releases a bunch of stored oxalates all at once. This can occur, for example, after you’ve been on a low-oxalate diet for a while or when you start eating differently. Oxalates are natural compounds found in many foods, and while they’re fine for most people, some individuals can have issues when they build up in the body.
Oxalate Dumping Symptoms
There are a few common reasons why someone might experience oxalate dumping:
- Digestive upset: You could feel bloated, gassy, or have some tummy cramps or diarrhea as your body works to get rid of the excess oxalates.
- Feeling under the weather: Some people report feeling fatigued, achy, or just generally unwell, similar to having the flu.
- Joint discomfort: You might notice some increased pain or stiffness in your joints, which can happen if oxalate crystals settle there.
- Skin reactions: It’s not uncommon to experience rashes, itching, or other skin issues during this process.
- Headaches: Some individuals may find that they get headaches or migraines when this happens.
- Kidney discomfort: If oxalates are released too quickly, it can lead to some pain or discomfort in the kidneys, especially if you’re prone to kidney stones.
- Frequent urination: You might find yourself needing to go to the bathroom more often as your body flushes out the oxalates.
Natural Solutions for Reducing Oxalates and Histamines
Natural solutions for managing oxalates and histamine include dietary changes, hydration, Gut microbial balance, and supplementation with things like Calcium and magnesium.
Both minerals can bind to oxalates in the digestive tract, preventing their absorption and reducing the risk of kidney stone formation. Magnesium citrate, Magnesium malate and magnesium threonate are commonly used forms of magnesium for supplementation, with the latter also helping to improve cognitive function and sleep quality (*).
Epsom salt baths (magnesium sulfate) are another effective method for reducing oxalate levels. These baths allow magnesium absorption through the skin, providing relief from symptoms. Starting with a small amount of Epsom salt and gradually increasing the dosage can help manage sensitivity. Baking soda can also be used as an oxalate binder, added to baths.
Supplements like Histamend DAO and Natural D Hist can improve symptoms associated with ingested or dietary histamine consumption. Histamend contains DAO, which helps break down foods high in histamine as well as histamine-producing gut bacteria. Natural D Hist contains stinging nettle, Bromelain, NAC, and Quercetin. These components are known for their anti-inflammatory properties and can support the body in managing histamine levels effectively.
DAO, or diamine oxidase, is an enzyme that plays a crucial role in breaking down histamine in the digestive tract. By supplementing with DAO, individuals with histamine intolerance may find relief from symptoms such as headaches, skin rashes, and digestive disturbances. Stinging nettle is another powerful ingredient that can help reduce inflammation and allergic responses, providing additional support for those with histamine intolerance.
Bromelain, derived from pineapples, is an enzyme known for its ability to reduce swelling and inflammation, which can be beneficial for managing histamine-related symptoms. NAC, or N-acetylcysteine, is a precursor to glutathione, a potent antioxidant that supports detoxification processes in the liver, helping to clear excess histamine from the body. Quercetin is a flavonoid that stabilizes mast cells, preventing them from releasing histamine and other inflammatory molecules.
Together, these supplements can provide a solid approach to managing histamine intolerance, supporting the body’s natural processes for breaking down and eliminating excess histamine. By incorporating these natural solutions into a broader strategy that includes dietary modifications and gut health improvements, individuals can better manage their symptoms and enhance their overall well-being.
Starting with small amounts of oxalate binders like calcium and gradually increasing can help individuals with sensitivities manage their symptoms effectively. Oxalate binders such as calcium, magnesium citrate, and potassium citrate are known to bind with dietary oxalates in the digestive tract, preventing their absorption and aiding in their excretion through urine.
This process not only reduces the risk of calcium oxalate kidney stones but also minimizes the oxalate load in the body, which can be beneficial for those experiencing oxalate dumping symptoms.
Additionally, incorporating a hybridized low-histamine/low-oxalate diet alongside these binders can further enhance the management of oxalate-related symptoms, promoting better overall health and reducing the risk of kidney stone formation.
Consulting with a Certified Functional Medicine Practitioner is recommended to ensure a balanced approach that aligns with individual health needs and dietary requirements.
Hydration is crucial for preventing kidney stones and maintaining overall health. Drinking ample water can help flush out oxalates and reduce the risk of stone formation. Combining these natural solutions with dietary changes can significantly improve the management of oxalate and histamine intolerance.

Consulting A Certified Functional Medicine Practitioner for Personalized Guidance
Working with a Certified Functional Medicine Practitioner is crucial before making significant dietary changes, especially for managing oxalate and histamine intolerance. Healthcare providers can help ensure that nutritional adjustments do not lead to nutrient deficiencies and exacerbated symptoms.
Personalized nutrition that addresses individual biochemical needs can significantly enhance recovery from chronic conditions. Certified Functional Medicine Practitioners can tailor dietary plans to address specific issues, helping individuals manage their symptoms more effectively. This approach can also help avoid unnecessary eliminations that may not be beneficial.
Reliable food sensitivity testing is essential for identifying specific triggers. Collaborating with healthcare practitioners for personalized testing can provide accurate information and guide appropriate dietary changes. This ensures that individuals receive the support they need to manage their intolerances effectively.
Summary
Understanding the impact of oxalates and histamine intolerance on your health is essential for managing symptoms and improving overall well-being. By identifying high-oxalate foods, managing oxalate intake, and prioritizing gut health, individuals can take proactive steps to alleviate their symptoms.
Consulting a Certified Functional Medicine Practitioner for personalized guidance and incorporating natural solutions can further enhance management strategies. With the right knowledge and support, individuals can navigate the complexities of oxalates and histamine intolerance, leading to a healthier, more vibrant life.
Frequently Asked Questions
What are oxalates?
Oxalates are naturally occurring compounds in various plants that can bind to minerals, potentially hindering their absorption and leading to health issues such as kidney stones and chronic inflammation. It is advisable to monitor oxalate intake, especially for individuals prone to these conditions.
How do oxalates affect histamine levels?
High levels of oxalates can trigger mast cells, resulting in increased inflammation and elevated histamine levels. This effect may exacerbate symptoms in individuals with histamine intolerance by imposing additional stress on detoxification mechanisms.
What symptoms are associated with excess oxalates and histamine intolerance?
Excess oxalates and histamine intolerance can lead to symptoms such as joint pain, fatigue, digestive issues, chronic inflammation, headaches, and skin reactions. The overlap of these symptoms may complicate the identification of the underlying cause.
Which foods are high in oxalates and should be avoided?
It is advisable to avoid foods high in oxalates, such as spinach, kale, beets, almonds, sweet potatoes, dates, raspberries, navy beans, and firm tofu, to effectively manage symptoms linked to oxalate and histamine intolerance. Prioritizing low-oxalate alternatives may provide relief.
Why is it important to consult healthcare practitioners for managing oxalate and histamine intolerance?
It is crucial to consult a Certified Functional Medicine Practitioner for managing oxalate and histamine intolerance, as they can provide personalized guidance to avoid nutrient deficiencies and worsening symptoms. Their expertise ensures safe and effective dietary adjustments tailored to individual health needs.
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