Are You Still Feeling Depressed, Anxious and Distracted Despite Taking Medications?
Understanding How Functional Medicine Approaches Mental Health: Anxiety and Depression
In recent years, the interplay between physiological processes and mental health has garnered considerable attention. With the surge of individuals seeking holistic approaches to health, functional medicine has emerged as an important avenue for addressing mental health conditions like anxiety and depression.
Unlike traditional methods, functional medicine looks at the whole person, not just isolated symptoms. When we say look at the whole person, what we mean is that we recognize that chronic health problems are multifactorial. This integrative approach seeks to identify and address root causes by evaluating a myriad of factors, including sex hormones, the thyroid gland, cortisol levels, gut microbiome, toxins, and genetic SNPs and how these affect mental health.

Sex Hormones and Mental Health
The balance of sex hormones such as estrogen, progesterone, and testosterone plays a significant role in mental health.
Estrogen, a hormone primarily associated with female reproductive health but present in both genders, significantly impacts mood regulation through the serotonin system. It increases serotonin production and enhances the sensitivity of serotonin receptors, leading to improved mood, emotion regulation, and overall well-being. Additionally, estrogen can decrease the activity of monoamine oxidase (MAO), an enzyme that breaks down serotonin, allowing serotonin to remain active in the brain for longer periods.
Fluctuations in estrogen levels during menstrual cycles, pregnancy, postpartum, and menopause can lead to mood swings, depression, and anxiety, underscoring estrogen’s impact on mental health.
Progesterone, another key sex hormone, influences mental health through its metabolite allopregnanolone, which interacts with the gamma-aminobutyric acid (GABA) system.

Variations in progesterone levels during the menstrual cycle can impact mood and anxiety levels, with some women experiencing premenstrual syndrome (PMS) or premenstrual dysphoric disorder (PMDD) due to progesterone fluctuations.
Testosterone, primarily known for its role in male development, also significantly impacts mental health by regulating the dopaminergic system.
Testosterone increases dopamine receptor density and dopamine release, particularly in brain areas associated with motivation and reward. This enhancement of dopaminergic activity can improve mood, increase motivation, and affect behaviors linked to reward processing.
Low testosterone levels have been associated with depression, fatigue, and decreased motivation, while optimal levels support mood stability and cognitive function, highlighting its role in mental health.
As A Certified Functional Medicine Practitioners its important to recognize that hormonal imbalances can impact mood and contribute to conditions like anxiety and depression- This is why I explain to patients that we always need to look at the BIG picture. We have to think ouside the box! How many people struggling with anxiety or depression have doctors who only prescribed antidepressants or antianxiety medications? Most of these patients NEVER feel better. Many will feel worse. Lets look at a few more connections.
For instance, low levels of estrogen, common in menopausal women, have been linked to increased anxiety.
Similarly, imbalances in androgens in both men and women can lead to mood disturbances.
Through detailed hormone assessments, functional medicine can introduce personalized approaches—such as lifestyle changes, nutritional support, and bioidentical hormone therapy—to restore balance and support mental health.
Thyroid and Mental Health
The thyroid gland, essential for regulating metabolism and energy, can significantly affect mental well-being.
Hypothyroidism, a condition characterized by low thyroid hormone production, often presents with symptoms overlapping with depression, including fatigue, low mood, and cognitive difficulties.
Conditions such as Hashimoto’s thyroiditis (leading to hypothyroidism) and Graves’ disease (leading to hyperthyroidism) are autoimmune disorders that can further influence mental health through direct effects on brain function and indirect effects from fluctuating hormone levels.
Functional medicine emphasizes thorough Thyroid testing to identify subclinical thyroid issues that might be missed in standard tests.
By addressing thyroid dysfunction through natural and medical interventions, individuals will often notice improvements in both physical energy and mood stability.

Cortisol and Mental Health
Cortisol, often referred to as the “stress hormone,” plays a crucial role in the body’s response to stress. It is produced by the adrenal glands and helps regulate various bodily functions, including metabolism, immune response, and, importantly, the brain’s response to stress. However, both high and low levels of cortisol can have significant effects on mental health.
The Problem with High Cortisol
Chronic stress can lead to consistently high cortisol levels, which can negatively impact mental health in a variety of ways. Prolonged exposure to elevated cortisol can result in symptoms such as anxiety and depression. High cortisol levels are associated with increased irritability, mood swings, and a greater susceptibility to stress. They can also affect cognitive functions, leading to memory problems and impaired concentration.
Over time, high cortisol levels can contribute to more serious mental health issues, including major depressive disorder and anxiety disorders. Furthermore, chronic stress and cortisol overproduction can lead to physical health problems that compound mental health issues, such as sleep disturbances and metabolic conditions.
Low Cortisol Is also A Problem
Low cortisol levels can also pose mental health challenges. Low cortisol is often associated with adrenal fatigue or can result from prolonged high levels that eventually cause adrenal burnout. Symptoms of low cortisol can include chronic fatigue, low energy, and a reduced ability to cope with stress.
Individuals with low cortisol may experience feelings of overwhelm and lack motivation. Emotionally, they might be more prone to apathy, a sense of hopelessness, or depression. Since cortisol plays a role in the ‘fight or flight’ response, low levels can impair the body’s ability to react appropriately to stress, potentially leading to feelings of helplessness or anxiety.
Functional medicine practitioners focus on measuring cortisol and other stress hormones.
Interventions might include stress-management techniques such as mindfulness, dietary modifications, and adaptogenic herbs designed to regulate cortisol production and improve mental health outcomes.

Gut Microbiome and Mental Health
The phrase “gut feeling” stems from a longstanding belief in a connection between our digestive system and emotions. Modern science has been uncovering the multifaceted nature of this gut-brain connection, emphasizing the incredible influence that gut health has on mental wellness. This gut brain connection can significantly influence mental health(*).
The gut-brain connection represents the bidirectional communication system between the gastrointestinal tract and the central nervous system. This gut brain connectioin influences
- Neural Pathways,
- Immune Function
- Microbial Metabolism
- Hormone Signaling
How Gut Bacteria Effect Mental Health: The Science
1. Impact on Neurotransmitter Production:
Gut bacteria are involved in the synthesis of critical neurotransmitters, such as serotonin. Interestingly, around 90% of the body’s serotonin is produced in the gut. An imbalance in gut flora can lead to mood disorders like depression and anxiety.
2. Inflammatory Processes:
Dysbiosis—a microbial imbalance in the gut—can increase gut permeability, leading to systemic inflammation. As mentioned in the discussion on chronic inflammation, inflammatory markers can cross the blood-brain barrier, potentially contributing to depression, anxiety, and other mental health disorders.
3. Stress Response:
Stress can alter gut microbiota composition, while gut health also influences the body’s stress response. Balanced gut flora helps mediate stress responses, potentially reducing anxiety levels.
4. Cognitive Function and Neurodegeneration:
Emerging research suggests that gut health influences cognitive processes and might have implications in conditions like Alzheimer’s disease. Healthy gut microbiota might protect against neurodegenerative changes.
Understanding the gut-brain connection reinforces the holistic nature of health—emotional and mental wellbeing is deeply intertwined with physical health, particularly gut health
Toxins and Mental Health
The relationship between toxins and mental health is a crucial area of research, as environmental and industrial toxins can have significant effects on the brain and psychological wellbeing.
Exposure to environmental toxins—such as heavy metals, pesticides, and pollutants—can impact neurological and mental health (*).
Different types of toxins are linked to various mental health issues.
For instance, heavy metals like lead, mercury, cadmium, and arsenic, commonly found in old paint, contaminated water, or industrial emissions, are neurotoxic and can contribute to cognitive deficits, anxiety, depression, and developmental disorders.
Pesticides, often encountered in agricultural environments, have been associated with neurodegenerative diseases and mood disorders.
Industrial pollutants like polychlorinated biphenyls (PCBs) can disrupt endocrine function, further contributing to cognitive impairments and mood disorders.
Additionally, organic solvents found in many industrial and cleaning products can adversely affect the central nervous system, potentially leading to anxiety and cognitive dysfunction.
Toxins affect mental health through several mechanisms. They directly damage neural cells, leading to reduced neuroplasticity and impaired neurotransmitter function, a phenomenon known as neurotoxicity.
These substances often increase oxidative stress by producing free radicals, damaging brain cells and tissue, which can result in mood disorders.
Some toxins act as endocrine disruptors, interfere with thyroid hormone production, and can affect mood and stress responses.
Furthermore, toxins can induce inflammatory responses, which are known risk factors for depression and other mental health issues due to their adverse impact on brain health.
Functional medicine places importance on reducing toxic burden and enhancing detoxification pathways.
Through comprehensive testing for toxins and personalized detox programs, individuals can often see improvements in mood and cognitive function as their toxic load decreases.
Genetic SNPs and Mental Health
Genetic factors can predispose individuals to mental health challenges. Single Nucleotide Polymorphisms (SNPs) in genes related to neurotransmitter synthesis and metabolism can impact mood regulation(*).
Functional medicine practitioners sometime employ genetic testing to understand individual predispositions and tailor interventions.
Nutritional and lifestyle modifications can often optimize genetic expressions, providing a more personalized roadmap for addressing anxiety and depression.
Neurotransmitters and Mental Health
The intricate field of mental health is deeply woven into the biological balance within our brains. Central to this balance are neurotransmitters, the chemical messengers that transmit signals between neurons.
Exploring the Role of Neurotransmitters in Mental Health: A Focus on Serotonin, Dopamine, GABA, and Glutamate
Neurotransmitters play a pivotal role in mood regulation, cognitive function, and overall mental well-being. Key neurotransmitters when discussing Depression and anxiety include Serotonin, Dopamine, GABA, and Glutamate. These neurotransmitters have a tremendous impact on mental health.
The Importance of Neurotransmitter Balance
Understanding neurotransmitters necessitates a grasp of the equilibrium between excitatory and inhibitory neurotransmitters.
Excitatory neurotransmitters, like Glutamate, stimulate brain activity, while inhibitory neurotransmitters, like GABA and Glycine, help calm the mind and promote relaxation(*).
A harmonious balance between these opposing forces is crucial for healthy brain function. Imbalances, whether due to genetic factors, hormone imbalance, nutrtional deficiencies or lifestyle influences, can lead to emotional and neurological disturbances—manifesting as conditions such as anxiety and depression.
Serotonin: The Mood Stabilizer
Often termed the “feel-good” neurotransmitter, Serotonin plays a vital role in regulating mood, anxiety, and happiness. Low levels of serotonin are closely linked to depression and mood disorders(*).
Genetic factors can influence serotonin production and uptake, with certain Genetic SNPs(Single Nucleotide Polymorphisms) potentially affecting serotonin pathways.
Understanding one’s genetic disposition through testing can tailor targeted interventions, such as dietary adjustments with serotonin-boosting foods or specific supplementation, to enhance mood and emotional stability.
Dopamine: The Reward Center
Dopamine is integral to the brain’s reward system, influencing feelings of pleasure, motivation, and concentration. Imbalances in dopamine levels are associated with conditions like ADD/ADHD, depression, and addictions.
Genetic testing can reveal SNPs that affect dopamine receptors and metabolism. Interventions to balance dopamine may include lifestyle changes, exercise, and nutritional support aimed at optimizing dopamine synthesis and receptor sensitivity, potentially enhancing motivation and focus.
GABA and Glutamate: The Balancing Act in Anxiety
GABA (Gamma-Aminobutyric Acid) and Glutamate represent the yin and yang of neurotransmission, reflective of relaxation and stimulation, respectively.
An imbalance between GABA and Glutamatecan lead to excessive excitation or inadequate inhibition, contributing to anxiety and stress disorders.
A focus on restoring balance is paramount. This can involve stress-reduction techniques, ensuring adequate GABA production, and reducing excessive glutamate activity through dietary and lifestyle changes. Genetic testing can play a role in understanding susceptibilities and crafting personalized strategies.
Testing Neurotransmitters
Advancements in neuroscience have made it possible to evaluate neurotransmitter levels through specialized testing. These tests can give insights into imbalances that aren’t always evident in traditional diagnostics.
By leveraging this information, healthcare practitioners can recommend protocol adjustments that are both scientific and personal.
Whether it’s addressing deficiencies through diet and supplements or implementing lifestyle changes to support neurotransmitter health, the goal is to create a state of balance conducive to optimal mental health.
Chronic Inflammation and Mental Health
Chronic inflammation has long been recognized as a contributing factor to a host of physical ailments, including heart disease, diabetes, and autoimmune disorders.
However, emerging research over the past few decades has highlighted its profound impact on mental health. Understanding how Chronic and persistent inflammation feeds into mental health disorders offers a pathway for innovative treatments and preventative measures.
5 Ways Chronic Inflammation Affects the Brain
1. Inflammatory Markers Correlate with Depression and Anxiety:
Numerous studies have indicated that individuals suffering from depression and anxiety often exhibit elevated levels of pro-inflammatory markers such as C-reactive protein (CRP) and cytokines (e.g., interleukin-6 and tumor necrosis factor-alpha).
Cytokines are small proteins that play crucial roles in cell signaling, particularly within the immune system. They act as messengers between cells, helping to regulate immune responses, inflammation, and the body’s defense mechanisms against disease.
Cytokines can be pro-inflammatory (promoting inflammation) or anti-inflammatory (reducing inflammation), and their balance is essential for maintaining healthy physiological functioning.
These Cytokines markers are not just byproducts of inflammation but active participants that may interfere with normal brain function.
2. Impact on Neurotransmitter Synthesis and Regulation:
Chronic inflammation can alter the synthesis and availability of neurotransmitters (*), which are critical for mood and cognition. For instance, inflammation can reduce tryptophan, the precursor to serotonin, leading to lowered serotonin levels associated with depression. Similarly, it may affect dopamine, critical for motivation and pleasure.
3. Blood-Brain Barrier Compromise:
Persistent inflammation can damage the blood-brain barrier (*), a protective shield around the brain that prevents harmful substances from entering. This barrier breakdown can allow inflammatory cells into the brain, contributing to neurological and psychiatric disorders.
4. Brain Network Disruptions:
Inflammation has been shown to affect brain networks, particularly those involved in mood regulation and executive function. Changes in these neural networks may be responsible for the cognitive and emotional symptoms observed in depression and anxiety disorders (*).
5. Role in Neurodegeneration:
Long-term inflammation can accelerate neurodegenerative processes, potentially worsening mental health conditions. It can lead to brain volume loss, specifically in areas such as the hippocampus (crucial for memory and emotional regulation) and can also contribute to cognitive decline(*).
Understanding the role of cytokines in mental health contributes to the broader field of psychoneuroimmunology, which examines the interaction between the nervous system, endocrine system, and immune system in mental health.
This research has important implications for the development of treatments targeting the immune system to manage or improve mental health conditions.
Anti-inflammatory treatments, lifestyle changes that reduce systemic inflammation, and therapies that modulate immune responses are potential strategies being explored in this context.
Learn more about Dr Hagmeyers Inflammatory Testing Panel
Heres What You Should Remember About Functional Medicine and Mental Health
Functional medicine offers a holistic approach to treating mental health disorders such as anxiety and depression by considering the interconnected systems within the body. By identifying and addressing root causes ranging from hormonal imbalances to genetic factors, functional medicine aims to create customized treatment plans that promote both mental and physical health. As awareness continues to grow, functional medicine stands as a promising approach for those seeking comprehensive and integrative solutions for mental health.
Research
“The latest advancement in neurobiological research provided an increasing evidence that inflammatory and neurodegenerative pathways play a relevant role in depression”.
Metab Brain Dis. 2009 Mar;24(1):27-53. Epub 2008 Dec 16
These findings suggest that targeting proinflammatory cytokines and their signaling pathways might represent a novel strategy to treat depression.
TRENDS in Immunology Vol.27 No.1 January 2006
The lifetime frequency of depression was significantly higher in the subjects who met the criteria for subclinical hypothyroidism (56%) than in those who did not (20%),
Am J Psychiatry. 1993 Mar;150(3):508-10
The gut-brain barrier in major depression: intestinal mucosal dysfunction with an increased translocation of LPS from gram negative enterobacteria (leaky gut) plays a role in the inflammatory pathophysiology of depression.
Neuro Endocrinol Lett. 2008 Feb;29(1):117-24.
There is a well-established relationship between alterations of various hormonal systems and psychiatric disorders, both in endocrine and psychiatric patients.
Dialogues Clin Neurosci. 2011 March; 13(1): 127–138.









